OpenMMS V1.5.1 Std Model
API Documentation

This document is the API Specification for the RCSB Macromolecular Structure Toolkit.

See:
Description

mmCIF Parser

org.rcsb.openmms.apps.stats	Provides classes to collect statistics on mmCIF data files using the low-level cifparse package.
org.rcsb.openmms.apps.xconv
org.rcsb.openmms.cifparse	Provides classes to parse mmCIF files.

Metamodel

org.rcsb.openmms.meta	Provides classes and interfaces that create and manipulate a macromolecular structure metamodel based on the mmCIF dictionary.
org.rcsb.openmms.util	Provides utility classes required by the MMS metamodel, category loaders and various data format expressions.

Entry Structures

org.rcsb.openmms.entry

A collection of classes that provide concrete implementations of Entry objects in the Corba modules and submodules and manage the Entry level MMS cache.

XML

org.rcsb.openmms.apps.xmc

Provides classes to convert macromolecular structure data files stored in mmCIF format into an XML style format (XMC).

Relational Database

org.rcsb.openmms.apps.rdb	Provides classes that implement PDBase, an application which loads macromolecular structure data files into a relational database.
org.rcsb.openmms.dbinsert	Provides classes for generating the low-level JDBC calls necessary to insert the MMS Entry data structure fields into a relational database.

CORBA

org.omg.DsLSRMacromolecularStructure
org.omg.DsLSRMmsReference
org.omg.DsLSRXRayCrystallography
org.rcsb.openmms.apps.dbserv
org.rcsb.openmms.apps.refserv	Classes that implement the MMS Corba Reference Server.
org.rcsb.openmms.apps.text	Classes for testing an MMS Corba server.
org.rcsb.openmms.loader	Provides classes to load macromolecular structure data files stored in mmCIF format into the MMS Entry data structure.

This document is the API Specification for the RCSB Macromolecular Structure Toolkit.